TopACT: Topological Automatic Cell Types
TopACT is a method for annotating subcellular spatial transcriptomics data with cell types inferred from a single-cell reference data set. See the paper “Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics” for details.
Installation
Install directly from the repository using pip:
pip install git+https://gitlab.com/kfbenjamin/topact.git
For development purposes, the package is maintained with Poetry. So you can
alternatively install Poetry and then run poetry install in the cloned repository.
Usage
See the Gitlab repository <https://gitlab.com/kfbenjamin/topact/>_ for a brief tutorial.
License
This project is licensed under the GNU General Public License v3.0.